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* ci: prototype tach-based modular skipping Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: modularize ubuntu setup and refine gating Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: adopt metaxy-inspired governance helpers - replace custom aggregate check with re-actors/alls-green - set FORCE_JAVASCRIPT_ACTIONS_TO_NODE24 on every workflow - keep PR concurrency alive when the graphite:merge label is present Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: tune checks and pin action versions Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: split CI suites and heavy examples Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * DCO Remediation Commit for Georg Heiler <georg.kf.heiler@gmail.com> I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: ecaa4777886157d5c2a7b3893c3a820983089dbf I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: d15416f3ca94ac97af2a8317cd6404208db9d896 Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: sharpen tach graph and per-suite path filters - Split docling.pipeline into per-pipeline tach modules (asr, vlm, standard_pdf, threaded_standard_pdf, legacy_standard_pdf, extraction_vlm, base, base_extraction, simple) so pytest --tach-base impact analysis can attribute changes to a specific pipeline rather than the whole package. - Split the asr- and vlm-specific docling.datamodel option files (asr_model_specs, pipeline_options_asr_model, vlm_engine_options, vlm_model_specs, pipeline_options_vlm_model, layout_model_specs, stage_model_specs, backend_options) into their own tach modules so a narrow spec/options change no longer marks the full datamodel as impacted. - Narrow the per-suite pipeline path filters in checks.yml to the concrete pipeline files relevant to each suite, so editing vlm_pipeline.py only triggers the vlm matrix cell and editing asr_pipeline.py only the asr one. - Rekey the model cache in setup-ubuntu-ci to include runner.os and hashFiles(uv.lock, pyproject.toml), with ordered restore-keys fallbacks so a lockfile bump no longer silently stales the cache. Metaxy parity note: layered tach enforcement (layer = "...") is blocked by existing backend<->datamodel and utils<->stages cycles; depot runners, nox dynamic matrices, devenv/nix, dprint and ty are not applicable to docling's stack. All pinned action SHAs are on their latest release as of this commit. Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: introduce pipeline and orchestration tach layers Earlier notes claimed layers were blocked. That was only true for the cyclic core (backend<->datamodel, utils<->stages). The boundary *above* core is clean: - No module under docling/backend, docling/datamodel, docling/models, docling/utils, docling/exceptions, or docling/chunking imports anything from docling.pipeline (verified by grep). - No module anywhere in docling/ imports from docling.cli, docling.document_converter, docling.document_extractor, or docling.service_client (also verified). So we can introduce two real layers on top of the cyclic core: - "pipeline" — docling.pipeline and all nine concrete pipelines (base, simple, base_extraction, asr, vlm, extraction_vlm, standard_pdf, threaded_standard_pdf, legacy_standard_pdf). - "orchestration" — docling.cli, docling.document_converter, docling.document_extractor, and docling.experimental.pipeline. Unlayered modules stay "below" both layers (tach allows them to be depended on freely) and continue to carry the declared-but-cyclic backend<->datamodel and utils<->stages edges. A VLM-only layer was explored but rejected: only docling.pipeline.vlm_pipeline and docling.pipeline.extraction_vlm_pipeline could be cleanly layered as "vlm", because the matching datamodel options (pipeline_options_vlm_model, vlm_engine_options, vlm_model_specs) and model stages (vlm_convert, vlm_pipeline_models) sit inside the datamodel/models cycle and cannot be promoted to a higher layer without first breaking that cycle. Layering only the two pipeline files is not worth the extra config. Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: expand tach layers to entrypoints/pipeline/models/core Follow-up to the two-layer attempt. After verifying via grep that nothing in datamodel/utils/backend imports from docling.models.{extraction,factories,plugins,vlm_pipeline_models} or from the "upper" stages (page_assemble, page_preprocessing, reading_order, picture_description, vlm_convert), those nine modules can be promoted out of the cyclic core into a dedicated "models" layer. The resulting order (highest first): - entrypoints — cli, document_converter, document_extractor, experimental.pipeline - pipeline — docling.pipeline + the nine concrete pipelines - models — model factories, extraction, plugins, vlm_pipeline_models, and the five "upper" stages - core — datamodel*, backend*, utils, exceptions, chunking, models (base), models.utils, inference_engines.*, the six "core stages" that utils cycles with (chart_extraction, code_formula, layout, ocr, picture_classifier, table_structure), and the experimental.* and service_client modules Rename the previous "orchestration" layer to "entrypoints" to match the common docling vocabulary. Every module now carries an explicit layer tag instead of relying on implicit unlayered behaviour, so future additions must pick a layer deliberately. A VLM layer, a stand-alone inference-engines layer, and separating datamodel from backend all remain blocked by the bidirectional backend<->datamodel and utils<->core-stages edges; those need a code-level refactor first. Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: refine tach client and foundation layers Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: add optional windows and macos smoke lanes Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: normalize reusable workflow boolean inputs Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: replace external all-green action Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: use org-allowed setup-uv action Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: install compiler toolchain for ML tests Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * DCO Remediation Commit for Georg Heiler <georg.kf.heiler@gmail.com> I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: bb714afb42cd1b29ab073a7f59cc72874ff2fdcd I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: a1f2761da8f72bfed636bd571ebf77b42c8771b6 Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * DCO Remediation Commit for Georg Heiler <georg.kf.heiler@gmail.com> I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: cc6551b54c5bf4815ae9cd57cf43a98928a74be0 I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: b21b0e7ca12b552dbdd54fac1bda113719c286f1 Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: simplify ML pytest suite patterns Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: gate heavy examples on label, add job timeouts - ci-heavy-examples: run only on main push, schedule, workflow_dispatch, or when a PR is labeled tests:full / tests:heavy-examples. Drops the path-based auto-trigger so that common edits to pyproject.toml, uv.lock, or .github/actions do not kick off the 45-60min matrix on every PR push. Collapses the changes job into a job-level if gate and adds timeout-minutes: 90. - checks.yml: add timeout-minutes to every job so stuck runners cannot burn the full 6h default. Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: tolerate cancelled allowed-skip jobs in check aggregator Intentional cancellations (manual cancel, concurrency replacement) on jobs that are already in ALLOWED_SKIPS should not mark the overall workflow red. Treat `cancelled` the same as `skipped` when the job is listed as an allowed skip; any unexpected cancellation of a required job still fails. Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * docs: make minimal vlm example portable Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * DCO Remediation Commit for Georg Heiler <georg.kf.heiler@gmail.com> I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: 2135051da3ed73d4b8a9130f584f40b56155af1a I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: 4f6d1d7960f7418d0cde6425ae61538da84fda40 Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: install workspace packages in CI syncs Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * DCO Remediation Commit for Georg Heiler <georg.kf.heiler@gmail.com> I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: 492fa9883d4de6d98ebcb40fa863eafe2facff3c I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: 3eefae71643f9ca3df0264690c0c6eb1f67f06f1 Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * DCO Remediation Commit for Georg Heiler <georg.kf.heiler@gmail.com> I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: fe8c9689a0ee94f36eb826da8e2177ef87404f5e I, Georg Heiler <georg.kf.heiler@gmail.com>, hereby add my Signed-off-by to this commit: eabdd24a6734ec873cdaac857718aef2473677e7 Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: remove unused graphite concurrency exception Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: document test labels and gate cross-platform lanes Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: select ml tests with pytest markers Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: fix marker selector typing Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: simplify ml suite scheduling Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: mark cross-platform smoke tests Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: reuse test trigger for ml matrix Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: tighten full ci aggregation Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> * ci: share required job result check Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> --------- Signed-off-by: Georg Heiler <georg.kf.heiler@gmail.com> Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
166 lines
5.4 KiB
Python
166 lines
5.4 KiB
Python
"""Test DeepSeek OCR markdown parsing in VLM pipeline."""
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import json
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import os
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import sys
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from pathlib import Path
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import pytest
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from docling_core.types.doc import DoclingDocument, Size
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from PIL import Image as PILImage
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from docling.datamodel import vlm_model_specs
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from docling.datamodel.base_models import (
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InputFormat,
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Page,
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PagePredictions,
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VlmPrediction,
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)
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from docling.datamodel.document import ConversionResult, InputDocument
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from docling.datamodel.pipeline_options import VlmPipelineOptions
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from docling.document_converter import DocumentConverter, PdfFormatOption
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from docling.pipeline.vlm_pipeline import VlmPipeline
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from docling.utils.deepseekocr_utils import parse_deepseekocr_markdown
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from .test_data_gen_flag import GEN_TEST_DATA
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from .verify_utils import verify_document, verify_export
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GENERATE = GEN_TEST_DATA
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pytestmark = pytest.mark.ml_vlm
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def get_md_deepseek_paths():
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"""Get all DeepSeek markdown test files."""
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directory = Path("./tests/data/md_deepseek/")
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md_files = sorted(directory.glob("*.md"))
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return md_files
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def mock_parsing(content: str, filename: str) -> DoclingDocument:
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"""Create a mock conversion result with the DeepSeek OCR markdown as VLM response."""
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# Create a page with the DeepSeek OCR markdown as VLM response
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page = Page(page_no=1)
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page._image_cache[1.0] = PILImage.new("RGB", (612, 792), color="white")
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page.predictions = PagePredictions()
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page.predictions.vlm_response = VlmPrediction(text=content)
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# Parse the DeepSeek OCR markdown using the utility function
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doc = parse_deepseekocr_markdown(
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content=content,
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original_page_size=Size(width=612, height=792),
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page_image=page.image,
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page_no=1,
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filename=filename,
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)
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return doc
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def test_e2e_deepseekocr_parsing():
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"""Test DeepSeek OCR markdown parsing for all test files."""
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md_paths = get_md_deepseek_paths()
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for md_path in md_paths:
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# Read the annotated markdown content
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with open(md_path, encoding="utf-8") as f:
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annotated_content = f.read()
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# Define groundtruth path
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gt_path = md_path.parent.parent / "groundtruth" / "docling_v2" / md_path.name
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# Parse the markdown using mock_parsing
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doc: DoclingDocument = mock_parsing(annotated_content, md_path.name)
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# Export to markdown
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pred_md: str = doc.export_to_markdown()
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assert verify_export(pred_md, str(gt_path) + ".md", GENERATE), "export to md"
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# Export to indented text
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pred_itxt: str = doc._export_to_indented_text(
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max_text_len=70, explicit_tables=False
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)
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assert verify_export(pred_itxt, str(gt_path) + ".itxt", GENERATE), (
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"export to indented-text"
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)
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# Verify document structure
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assert verify_document(doc, str(gt_path) + ".json", GENERATE), (
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"document document"
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)
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def test_e2e_deepseekocr_conversion():
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"""Test DeepSeek OCR VLM conversion on a PDF file."""
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# Skip in CI or if ollama is not available
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if os.getenv("CI"):
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pytest.skip("Skipping in CI environment")
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# Check if ollama is available
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try:
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import requests
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response = requests.get("http://localhost:11434/v1/models", timeout=2)
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if response.status_code != 200:
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pytest.skip("Ollama is not available")
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except Exception:
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pytest.skip("Ollama is not available")
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# Setup the converter with DeepSeek OCR VLM
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pipeline_options = VlmPipelineOptions(
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vlm_options=vlm_model_specs.DEEPSEEKOCR_OLLAMA,
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enable_remote_services=True,
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)
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converter = DocumentConverter(
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format_options={
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InputFormat.PDF: PdfFormatOption(
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pipeline_cls=VlmPipeline,
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pipeline_options=pipeline_options,
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),
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}
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)
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# Convert the PDF
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pdf_path = Path("./tests/data/pdf/2206.01062.pdf")
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conv_result = converter.convert(pdf_path)
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# Load reference document
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ref_path = Path("./tests/data/groundtruth/docling_v2/deepseek_title.md.json")
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ref_doc = DoclingDocument.load_from_json(ref_path)
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# Validate conversion result
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doc = conv_result.document
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# Check number of pages
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assert len(doc.pages) == 9, f"Number of pages mismatch: {len(doc.pages)}"
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# Compare features of the first page (excluding bbox which can vary)
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# Check that we have similar structure
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assert len(doc.texts) > 0, "Document should have text elements"
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assert len(doc.pictures) > 0, "Document should have picture elements"
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# Check that the title is present
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title_texts = [t for t in doc.texts if t.label == "title"]
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assert len(title_texts) > 0, "Document should have a title"
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# Check that we have section headers
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section_headers = [t for t in doc.texts if t.label == "section_header"]
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assert len(section_headers) > 0, "Document should have section headers"
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# Compare with reference document structure (not exact bbox)
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ref_title_texts = [t for t in ref_doc.texts if t.label == "title"]
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assert len(title_texts) == len(ref_title_texts), (
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f"Title count mismatch: {len(title_texts)} vs {len(ref_title_texts)}"
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)
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print(
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f"✓ Conversion successful with {len(doc.texts)} text elements and {len(doc.pictures)} pictures"
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)
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if __name__ == "__main__":
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test_e2e_deepseekocr_parsing()
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test_e2e_deepseekocr_conversion()
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