From 9b905728e1deda438ad504586bfb91f6efdc8a2a Mon Sep 17 00:00:00 2001 From: Michele Dolfi Date: Wed, 26 Feb 2025 11:31:31 +0100 Subject: [PATCH] add pyproject and ci Signed-off-by: Michele Dolfi --- .github/PULL_REQUEST_TEMPLATE.md | 12 + .github/SECURITY.md | 23 + .github/mergify.yml | 9 + .github/scripts/release.sh | 39 + .github/workflows/actionlint.yml | 23 + .github/workflows/cd.yml | 59 + .github/workflows/ci.yml | 16 + .github/workflows/job-checks.yml | 22 + .github/workflows/pypi.yml | 32 + .gitignore | 1 - .pre-commit-config.yaml | 24 + .python-version | 1 + CONTRIBUTING.md | 61 +- docling_jobkit/__init__.py | 0 pyproject.toml | 212 ++ uv.lock | 3424 ++++++++++++++++++++++++++++++ 16 files changed, 3924 insertions(+), 34 deletions(-) create mode 100644 .github/PULL_REQUEST_TEMPLATE.md create mode 100644 .github/SECURITY.md create mode 100644 .github/mergify.yml create mode 100755 .github/scripts/release.sh create mode 100644 .github/workflows/actionlint.yml create mode 100644 .github/workflows/cd.yml create mode 100644 .github/workflows/ci.yml create mode 100644 .github/workflows/job-checks.yml create mode 100644 .github/workflows/pypi.yml create mode 100644 .pre-commit-config.yaml create mode 100644 .python-version create mode 100644 docling_jobkit/__init__.py create mode 100644 pyproject.toml create mode 100644 uv.lock diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 0000000..d5a5326 --- /dev/null +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,12 @@ + + + + + diff --git a/.github/SECURITY.md b/.github/SECURITY.md new file mode 100644 index 0000000..a93f90e --- /dev/null +++ b/.github/SECURITY.md @@ -0,0 +1,23 @@ +# Security and Disclosure Information Policy for the Docling Project + +The Docling team and community take security bugs seriously. We appreciate your efforts to responsibly disclose your findings, and will make every effort to acknowledge your contributions. + +## Reporting a Vulnerability + +If you think you've identified a security issue in an Docling project repository, please DO NOT report the issue publicly via the GitHub issue tracker, etc. + +Instead, send an email with as many details as possible to [deepsearch-core@zurich.ibm.com](mailto:deepsearch-core@zurich.ibm.com). This is a private mailing list for the maintainers team. + +Please do not create a public issue. + +## Security Vulnerability Response + +Each report is acknowledged and analyzed by the core maintainers within 3 working days. + +Any vulnerability information shared with core maintainers stays within the Docling project and will not be disseminated to other projects unless it is necessary to get the issue fixed. + +After the initial reply to your report, the security team will keep you informed of the progress towards a fix and full announcement, and may ask for additional information or guidance. + +## Security Alerts + +We will send announcements of security vulnerabilities and steps to remediate on the [Docling announcements](https://github.com/DS4SD/docling-jobkit/discussions/categories/announcements). diff --git a/.github/mergify.yml b/.github/mergify.yml new file mode 100644 index 0000000..78074c5 --- /dev/null +++ b/.github/mergify.yml @@ -0,0 +1,9 @@ +merge_protections: + - name: Enforce conventional commit + description: Make sure that we follow https://www.conventionalcommits.org/en/v1.0.0/ + if: + - base = main + success_conditions: + - "title ~= + ^(fix|feat|docs|style|refactor|perf|test|build|ci|chore|revert)(?:\\(.+\ + \\))?(!)?:" diff --git a/.github/scripts/release.sh b/.github/scripts/release.sh new file mode 100755 index 0000000..da55910 --- /dev/null +++ b/.github/scripts/release.sh @@ -0,0 +1,39 @@ +#!/bin/bash + +set -e # trigger failure on error - do not remove! +set -x # display command on output + +if [ -z "${TARGET_VERSION}" ]; then + >&2 echo "No TARGET_VERSION specified" + exit 1 +fi +CHGLOG_FILE="${CHGLOG_FILE:-CHANGELOG.md}" + +# update package version +uvx --from=toml-cli toml set --toml-path=pyproject.toml project.version "${TARGET_VERSION}" + +# collect release notes +REL_NOTES=$(mktemp) +uv run --no-sync semantic-release changelog --unreleased >> "${REL_NOTES}" + +# update changelog +TMP_CHGLOG=$(mktemp) +TARGET_TAG_NAME="v${TARGET_VERSION}" +RELEASE_URL="$(gh repo view --json url -q ".url")/releases/tag/${TARGET_TAG_NAME}" +printf "## [${TARGET_TAG_NAME}](${RELEASE_URL}) - $(date -Idate)\n\n" >> "${TMP_CHGLOG}" +cat "${REL_NOTES}" >> "${TMP_CHGLOG}" +if [ -f "${CHGLOG_FILE}" ]; then + printf "\n" | cat - "${CHGLOG_FILE}" >> "${TMP_CHGLOG}" +fi +mv "${TMP_CHGLOG}" "${CHGLOG_FILE}" + +# push changes +git config --global user.name 'github-actions[bot]' +git config --global user.email 'github-actions[bot]@users.noreply.github.com' +git add pyproject.toml "${CHGLOG_FILE}" +COMMIT_MSG="chore: bump version to ${TARGET_VERSION} [skip ci]" +git commit -m "${COMMIT_MSG}" +git push origin main + +# create GitHub release (incl. Git tag) +gh release create "${TARGET_TAG_NAME}" -F "${REL_NOTES}" diff --git a/.github/workflows/actionlint.yml b/.github/workflows/actionlint.yml new file mode 100644 index 0000000..c2ae5b4 --- /dev/null +++ b/.github/workflows/actionlint.yml @@ -0,0 +1,23 @@ +name: Lint GitHub Actions workflows +on: + push: + branches: ["main"] + paths: + - '.github/**' + pull_request: + branches: ["main"] + paths: + - '.github/**' + +jobs: + actionlint: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - name: Download actionlint + id: get_actionlint + run: bash <(curl https://raw.githubusercontent.com/rhysd/actionlint/main/scripts/download-actionlint.bash) + shell: bash + - name: Check workflow files + run: PATH=".:$PATH" make action-lint + shell: bash diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml new file mode 100644 index 0000000..57ee3db --- /dev/null +++ b/.github/workflows/cd.yml @@ -0,0 +1,59 @@ +name: "Run CD" + +on: + workflow_dispatch: + +jobs: + code-checks: + uses: ./.github/workflows/job-checks.yml + pre-release-check: + runs-on: ubuntu-latest + outputs: + TARGET_TAG_V: ${{ steps.version_check.outputs.TRGT_VERSION }} + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 # for fetching tags, required for semantic-release + - name: Install uv and set the python version + uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + - name: Install dependencies + run: uv sync --only-dev + - name: Check version of potential release + id: version_check + run: | + TRGT_VERSION=$(uv run --no-sync semantic-release print-version) + echo "TRGT_VERSION=${TRGT_VERSION}" >> "$GITHUB_OUTPUT" + echo "${TRGT_VERSION}" + - name: Check notes of potential release + run: uv run --no-sync semantic-release changelog --unreleased + release: + needs: [code-checks, pre-release-check] + if: needs.pre-release-check.outputs.TARGET_TAG_V != '' + environment: auto-release + runs-on: ubuntu-latest + concurrency: release + steps: + - uses: actions/create-github-app-token@v1 + id: app-token + with: + app-id: ${{ vars.CI_APP_ID }} + private-key: ${{ secrets.CI_PRIVATE_KEY }} + - uses: actions/checkout@v4 + with: + token: ${{ steps.app-token.outputs.token }} + fetch-depth: 0 # for fetching tags, required for semantic-release + - name: Install uv and set the python version + uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + - name: Install dependencies + run: uv sync --only-dev + - name: Run release script + env: + GH_TOKEN: ${{ steps.app-token.outputs.token }} + TARGET_VERSION: ${{ needs.pre-release-check.outputs.TARGET_TAG_V }} + CHGLOG_FILE: CHANGELOG.md + run: ./.github/scripts/release.sh + shell: bash diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 0000000..3632ec2 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,16 @@ +name: "Run CI" + +on: + push: + branches: ["main"] + pull_request: + branches: ["main"] + +jobs: + code-checks: + uses: ./.github/workflows/job-checks.yml + permissions: + packages: write + contents: read + attestations: write + id-token: write diff --git a/.github/workflows/job-checks.yml b/.github/workflows/job-checks.yml new file mode 100644 index 0000000..91577b9 --- /dev/null +++ b/.github/workflows/job-checks.yml @@ -0,0 +1,22 @@ +name: Run checks + +on: + workflow_call: + +jobs: + py-lint: + runs-on: ubuntu-latest + strategy: + matrix: + python-version: ['3.12'] + steps: + - uses: actions/checkout@v4 + - name: Install uv and set the python version + uses: astral-sh/setup-uv@v5 + with: + python-version: ${{ matrix.python-version }} + enable-cache: true + - name: Install dependencies + run: uv sync --all-extras --no-extra cu124 + - name: Run styling check + run: uv run --no-sync pre-commit run --all-files diff --git a/.github/workflows/pypi.yml b/.github/workflows/pypi.yml new file mode 100644 index 0000000..ab8cd5e --- /dev/null +++ b/.github/workflows/pypi.yml @@ -0,0 +1,32 @@ +name: "Build and publish package" + +on: + release: + types: [published] + +permissions: + contents: read + +jobs: + build-and-publish: + runs-on: ubuntu-latest + environment: + name: pypi + url: https://pypi.org/p/docling-jobkit # Replace with your PyPI project name + permissions: + id-token: write # IMPORTANT: mandatory for trusted publishing + steps: + - uses: actions/checkout@v4 + - name: Install uv and set the python version + uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + - name: Install dependencies + run: uv sync --all-extras --no-extra cu124 + - name: Build + run: uv build + - name: Publish distribution 📦 to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + # currently not working with reusable workflows + attestations: false diff --git a/.gitignore b/.gitignore index 73f3cb1..9f96a5b 100644 --- a/.gitignore +++ b/.gitignore @@ -284,7 +284,6 @@ tags [Ll]ib [Ll]ib64 [Ll]ocal -[Ss]cripts pyvenv.cfg pip-selfcheck.json diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..cd4dcf9 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,24 @@ +fail_fast: true +repos: + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.9.6 + hooks: + # Run the Ruff linter. + - id: ruff + args: [--exit-non-zero-on-fix, --config=pyproject.toml] + # Run the Ruff formatter. + # - id: ruff-format + # args: [--config=pyproject.toml] + - repo: local + hooks: + - id: system + name: MyPy + entry: uv run --no-sync mypy docling_serve + pass_filenames: false + language: system + files: '\.py$' + - repo: https://github.com/astral-sh/uv-pre-commit + # uv version. + rev: 0.6.1 + hooks: + - id: uv-lock diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index d2774aa..036b0dd 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -2,10 +2,10 @@ Our project welcomes external contributions. If you have an itch, please feel free to scratch it. -To contribute code or documentation, please submit a [pull request](https://github.com/DS4SD/docling-pipelines/pulls). +To contribute code or documentation, please submit a [pull request](https://github.com/DS4SD/docling-jobkit/pulls). A good way to familiarize yourself with the codebase and contribution process is -to look for and tackle low-hanging fruit in the [issue tracker](https://github.com/DS4SD/docling-pipelines/issues). +to look for and tackle low-hanging fruit in the [issue tracker](https://github.com/DS4SD/docling-jobkit/issues). Before embarking on a more ambitious contribution, please quickly [get in touch](#communication) with us. For general questions or support requests, please refer to the [discussion section](https://github.com/DS4SD/docling/discussions) @@ -17,14 +17,14 @@ cannot be accepted at all!** ### Proposing New Features -If you would like to implement a new feature, please [raise an issue](https://github.com/DS4SD/docling-pipelines/issues) +If you would like to implement a new feature, please [raise an issue](https://github.com/DS4SD/docling-jobkit/issues) before sending a pull request so the feature can be discussed. This is to avoid you spending valuable time working on a feature that the project developers are not interested in accepting into the codebase. ### Fixing Bugs -If you would like to fix a bug, please [raise an issue](https://github.com/DS4SD/docling/docling-pipelines) before sending a +If you would like to fix a bug, please [raise an issue](https://github.com/DS4SD/docling/docling-jobkit) before sending a pull request so it can be tracked. ### Merge Approval @@ -85,44 +85,39 @@ Please feel free to connect with us using the [discussion section](https://githu ## Developing -### Usage of Poetry +### Usage of `uv` -We use Poetry to manage dependencies. +We use `uv` to manage dependencies. #### Installation -To install Poetry, follow the documentation here: https://python-poetry.org/docs/master/#installing-with-the-official-installer +To install `uv`, follow the documentation here: https://docs.astral.sh/uv/getting-started/installation/ -1. Install Poetry globally on your machine: +1. Install `uv` globally on your machine: ```bash - curl -sSL https://install.python-poetry.org | python3 - + curl -LsSf https://astral.sh/uv/install.sh | sh ``` - The installation script will print the installation bin folder `POETRY_BIN` which you need in the next steps. - -2. Make sure Poetry is in your `$PATH`: - - for `zsh`: - ```sh - echo 'export PATH="POETRY_BIN:$PATH"' >> ~/.zshrc - ``` - - for `bash`: - ```sh - echo 'export PATH="POETRY_BIN:$PATH"' >> ~/.bashrc - ``` 3. The official guidelines linked above include useful details on configuring autocomplete for most shell environments, e.g., Bash and Zsh. #### Create a Virtual Environment and Install Dependencies -To activate the Virtual Environment, run: +To create the Virtual Environment, run: ```bash -poetry shell +uv venv ``` -This will spawn a shell with the Virtual Environment activated. If the Virtual Environment doesn't exist, Poetry will create one for you. Then, to install dependencies, run: +The virtual environment can be "activated" to make its packages available: ```bash -poetry install +source .venv/bin/activate +``` + +Then, to install dependencies, run: + +```bash +uv sync ``` **(Advanced) Use a Specific Python Version** @@ -130,25 +125,25 @@ poetry install If you need to work with a specific (older) version of Python, run: ```bash -poetry env use $(which python3.8) +uv venv --python 3.11 ``` -This creates a Virtual Environment with Python 3.8. For other versions, replace `$(which python3.8)` with the path to the interpreter (e.g., `/usr/bin/python3.8`) or use `$(which pythonX.Y)`. +More detailed options are described in the [uv documentation](https://docs.astral.sh/uv/pip/environments). + #### Add a New Dependency ```bash -poetry add NAME +uv add NAME ``` -## Coding Style Guidelines +## Coding style guidelines We use the following tools to enforce code style: -- iSort, to sort imports -- Black, to format code +- ruff, to sort imports and format code -We run a series of checks on the codebase on every commit using `pre-commit`. To install the hooks, run: +We run a series of checks on the code base on every commit, using `pre-commit`. To install the hooks, run: ```bash pre-commit install @@ -156,8 +151,8 @@ pre-commit install To run the checks on-demand, run: -```bash +```shell pre-commit run --all-files ``` -Note: Checks like `Black` and `isort` will "fail" if they modify files. This is because `pre-commit` doesn't like to see files modified by its hooks. In these cases, `git add` the modified files and `git commit` again. +Note: Formatting checks like `ruff` will "fail" if they modify files. This is because `pre-commit` doesn't like to see files modified by their Hooks. In these cases, `git add` the modified files and `git commit` again. \ No newline at end of file diff --git a/docling_jobkit/__init__.py b/docling_jobkit/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..9f5fc4b --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,212 @@ +[project] +name = "docling-jobkit" +version = "0.1.0" # DO NOT EDIT, updated automatically +description = "Running a distributed job processing documents with Docling." +readme = "README.md" +license = {text = "MIT"} +authors = [ + {name="Michele Dolfi", email="dol@zurich.ibm.com"}, + {name="Viktor Kuropiatnyk", email="vku@zurich.ibm.com"}, + {name="Tiago Santana", email="Tiago.Santana@ibm.com"}, + {name="Cesar Berrospi Ramis", email="ceb@zurich.ibm.com"}, + {name="Panos Vagenas", email="pva@zurich.ibm.com"}, + {name="Christoph Auer", email="cau@zurich.ibm.com"}, + {name="Peter Staar", email="taa@zurich.ibm.com"}, +] +maintainers = [ + {name="Michele Dolfi", email="dol@zurich.ibm.com"}, + {name="Cesar Berrospi Ramis", email="ceb@zurich.ibm.com"}, + {name="Panos Vagenas", email="pva@zurich.ibm.com"}, + {name="Christoph Auer", email="cau@zurich.ibm.com"}, + {name="Peter Staar", email="taa@zurich.ibm.com"}, +] +classifiers = [ + "License :: OSI Approved :: MIT License", + "Operating System :: OS Independent", + # "Development Status :: 5 - Production/Stable", + "Intended Audience :: Developers", + "Typing :: Typed", + "Programming Language :: Python :: 3" +] +requires-python = ">=3.10" +dependencies = [ + "ray~=2.30", + "docling~=2.23", + "typer~=0.12", +] + +[project.optional-dependencies] +tesserocr = [ + "tesserocr~=2.7" +] +rapidocr = [ + "rapidocr-onnxruntime~=1.4; python_version<'3.13'", + "onnxruntime~=1.7", +] +cpu = [ + "torch>=2.6.0", + "torchvision>=0.21.0", +] +cu124 = [ + "torch>=2.6.0", + "torchvision>=0.21.0", +] + + +[dependency-groups] +dev = [ + "mypy~=1.11", + "pre-commit~=3.8", + "pytest~=8.3", + "pytest-asyncio~=0.24", + "pytest-check~=2.4", + "python-semantic-release~=7.32", + "ruff>=0.9.6", +] + +[tool.uv] +package = true +conflicts = [ + [ + { extra = "cpu" }, + { extra = "cu124" }, + ], +] + +[tool.uv.sources] +torch = [ + { index = "pytorch-cpu", extra = "cpu" }, + { index = "pytorch-cu124", extra = "cu124" }, +] +torchvision = [ + { index = "pytorch-cpu", extra = "cpu" }, + { index = "pytorch-cu124", extra = "cu124" }, +] + +[[tool.uv.index]] +name = "pytorch-cpu" +url = "https://download.pytorch.org/whl/cpu" +explicit = true + +[[tool.uv.index]] +name = "pytorch-cu124" +url = "https://download.pytorch.org/whl/cu124" +explicit = true + +[tool.setuptools.packages.find] +include = ["docling_jobkit"] + +[project.scripts] +docling-jobkit = "docling_pipeline.app:main" + +[project.urls] +Homepage = "https://github.com/DS4SD/docling-jobkit" +# Documentation = "https://ds4sd.github.io/docling" +Repository = "https://github.com/DS4SD/docling-jobkit" +Issues = "https://github.com/DS4SD/docling-jobkit/issues" +Changelog = "https://github.com/DS4SD/docling-jobkit/blob/main/CHANGELOG.md" + +[tool.ruff] +target-version = "py310" +line-length = 88 +respect-gitignore = true + +# extend-exclude = [ +# "tests", +# ] + +[tool.ruff.format] +skip-magic-trailing-comma = false + +[tool.ruff.lint] +select = [ + # "B", # flake8-bugbear + "C", # flake8-comprehensions + "C9", # mccabe + # "D", # flake8-docstrings + "E", # pycodestyle errors (default) + "F", # pyflakes (default) + "I", # isort + "PD", # pandas-vet + "PIE", # pie + # "PTH", # pathlib + "Q", # flake8-quotes + # "RET", # return + "RUF", # Enable all ruff-specific checks + # "SIM", # simplify + "S307", # eval + # "T20", # (disallow print statements) keep debugging statements out of the codebase + "W", # pycodestyle warnings + "ASYNC" # async +] + +ignore = [ + "E501", # Line too long, handled by ruff formatter + "D107", # "Missing docstring in __init__", + "F811", # "redefinition of the same function" + "PL", # Pylint + "RUF012", # Mutable Class Attributes +] + +#extend-select = [] + +[tool.ruff.lint.per-file-ignores] +"__init__.py" = ["E402", "F401"] +"tests/*.py" = ["ASYNC"] # Disable ASYNC check for tests + +[tool.ruff.lint.mccabe] +max-complexity = 15 + +[tool.ruff.lint.isort.sections] +"docling" = ["docling", "docling_core"] + +[tool.ruff.lint.isort] +combine-as-imports = true +section-order = [ + "future", + "standard-library", + "third-party", + "docling", + "first-party", + "local-folder", +] + +[tool.mypy] +pretty = true +# strict = true +no_implicit_optional = true +plugins = "pydantic.mypy" +python_version = "3.10" + +[[tool.mypy.overrides]] +module = [ + "easyocr.*", + "tesserocr.*", + "rapidocr_onnxruntime.*", +] +ignore_missing_imports = true + +[tool.pytest.ini_options] +asyncio_mode = "auto" +asyncio_default_fixture_loop_scope = "function" +minversion = "8.2" +testpaths = [ + "tests", +] +addopts = "-rA --color=yes --tb=short --maxfail=5" +markers = [ +"asyncio", +] + +[tool.semantic_release] +# for default values check: +# https://github.com/python-semantic-release/python-semantic-release/blob/v7.32.2/semantic_release/defaults.cfg + +version_source = "tag_only" +branch = "main" + +# configure types which should trigger minor and patch version bumps respectively +# (note that they must be a subset of the configured allowed types): +parser_angular_allowed_types = "build,chore,ci,docs,feat,fix,perf,style,refactor,test" +parser_angular_minor_types = "feat" +parser_angular_patch_types = "fix,perf" diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..f790be6 --- /dev/null +++ b/uv.lock @@ -0,0 +1,3424 @@ +version = 1 +revision = 1 +requires-python = ">=3.10" +resolution-markers = [ + "python_full_version >= '3.12' and platform_machine == 'x86_64' and sys_platform == 'darwin'", + "python_full_version >= '3.12' and platform_machine != 'x86_64' and sys_platform == 'darwin'", + "python_full_version >= '3.12' and 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